[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 50 items for (author: williams & dl)

EMDB-15084:
cryo-EM structure of thioredoxin glutathione reductase in complex with a non-competitive inhibitor
Method: single particle / : Ardini M, Angelucci F, Fata F, Gabriele F, Effantin G, Ling W, Williams DL, Petukhova VZ, Petukhov PA

EMDB-26663:
Tau Paired Helical Filament from Alzheimer's Disease not incubated with EGCG
Method: helical / : Seidler PM, Murray KA, Boyer DR, Ge P, Sawaya MR, Eisenberg DS

EMDB-26664:
Tau Paired Helical Filament from Alzheimer's Disease incubated 1 hr. with EGCG
Method: helical / : Seidler PM, Murray KA, Boyer DR, Ge P, Sawaya MR, Eisenberg DS

EMDB-26665:
Tau Paired Helical Filament from Alzheimer's Disease incubated with EGCG for 3 hours
Method: helical / : Seidler PM, Murray KA, Boyer DR, Ge P, Sawaya MR, Eisenberg DS

PDB-7upe:
Tau Paired Helical Filament from Alzheimer's Disease not incubated with EGCG
Method: helical / : Seidler PM, Murray KA, Boyer DR, Ge P, Sawaya MR, Eisenberg DS

PDB-7upf:
Tau Paired Helical Filament from Alzheimer's Disease incubated 1 hr. with EGCG
Method: helical / : Seidler PM, Murray KA, Boyer DR, Ge P, Sawaya MR, Eisenberg DS

PDB-7upg:
Tau Paired Helical Filament from Alzheimer's Disease incubated with EGCG for 3 hours
Method: helical / : Seidler PM, Murray KA, Boyer DR, Ge P, Sawaya MR, Eisenberg DS

EMDB-23023:
The Structure of the moss PSI-LHCI reveals the evolution of the LHCI antenna
Method: single particle / : Riddle R, Gorski C, Toporik H, Dobson Z, Da Z, Williams D, Mazor Y

EMDB-23034:
The Structure of the moss PSI-LHCI reveals the evolution of the LHCI antenna
Method: single particle / : Riddle R, Gorski C, Toporik H, Dobson Z, Da Z, Williams D, Mazor Y

EMDB-23040:
The Structure of the moss PSI-LHCI reveals the evolution of the LHCI antenna
Method: single particle / : Riddle R, Gorski C, Toporik H, Dobson Z, Da Z, Williams D, Mazor Y

PDB-7ksq:
The Structure of the moss PSI-LHCI reveals the evolution of the LHCI antenna
Method: single particle / : Riddle R, Gorski C, Toporik H, Dobson Z, Da Z, Williams D, Mazor Y

PDB-7ku5:
The Structure of the moss PSI-LHCI reveals the evolution of the LHCI antenna
Method: single particle / : Riddle R, Gorski C, Toporik H, Dobson Z, Da Z, Williams D, Mazor Y

PDB-7kux:
The Structure of the moss PSI-LHCI reveals the evolution of the LHCI antenna
Method: single particle / : Riddle R, Gorski C, Toporik H, Dobson Z, Da Z, Williams D, Mazor Y

EMDB-25102:
CryoEM structure of Venezuelan Equine Encephalitis virus (VEEV) TC-83 strain VLP
Method: single particle / : Binshtein E, Crowe JE

EMDB-25103:
CryoEM structure of Venezuelan Equine Encephalitis virus (VEEV) TC-83 strain VLP in complex with Fab hVEEV-63
Method: single particle / : Binshtein E, Crowe JE

EMDB-25104:
CryoEM structure of Venezuelan Equine Encephalitis virus (VEEV) TC-83 strain VLP in complex with Fab hVEEV-63 (focus refine of the asymmetric unit)
Method: single particle / : Binshtein E, Crowe JE

PDB-7sfu:
CryoEM structure of Venezuelan Equine Encephalitis virus (VEEV) TC-83 strain VLP
Method: single particle / : Binshtein E, Crowe JE

PDB-7sfv:
CryoEM structure of Venezuelan Equine Encephalitis virus (VEEV) TC-83 strain VLP in complex with Fab hVEEV-63
Method: single particle / : Binshtein E, Crowe JE

PDB-7sfw:
CryoEM structure of Venezuelan Equine Encephalitis virus (VEEV) TC-83 strain VLP in complex with Fab hVEEV-63 (focus refine of the asymmetric unit)
Method: single particle / : Binshtein E, Crowe JE

EMDB-25581:
cryoEM reconstruction of the HIV gp140 in complex with the extracellular domains of CD4 and the adnectin domain of Combinectin. The gp140 and CD4 coordinates from entry 6EDU were rigid body fitted to the EM map along withe the crystal structure of CD4+adnectin
Method: single particle / : Concha NO, William SP, Wenzel DL

PDB-7l6o:
Cryo-EM structure of HIV-1 Env CH848.3.D0949.10.17chim.6R.DS.SOSIP.664
Method: single particle / : Manne K, Edwards RJ, Acharya P

EMDB-23518:
Cryo-EM map of DH851.3 bound to HIV-1 CH505 Env
Method: single particle / : Edwards RJ, Manne K, Acharya P

PDB-7lu9:
Cryo-EM structure of DH851.3 bound to HIV-1 CH505 Env
Method: single particle / : Manne K, Edwards RJ, Acharya P

EMDB-23519:
Cryo-EM map of DH898.1 Fab-dimer bound near the CD4 binding site of HIV-1 Env CH848 SOSIP trimer
Method: single particle / : Edwards RJ, Manne K, Acharya P

PDB-7lua:
Cryo-EM structure of DH898.1 Fab-dimer bound near the CD4 binding site of HIV-1 Env CH848 SOSIP trimer
Method: single particle / : Manne K, Edwards RJ, Acharya P

EMDB-23152:
Cryo-electron microscopy reconstruction of antibody DH898.1 Fab-dimer bound to glycans 332, 392, and 396 of HIV Env CH848 10.17 SOSIP trimer
Method: single particle / : Edwards RJ, Acharya P

EMDB-23153:
Cryo-electron microscopy local refinement of antibody DH898.1 Fab-dimer bound to glycans 332, 392, and 396 of HIV Env CH848 10.17 SOSIP trimer
Method: single particle / : Edwards RJ, Acharya P

EMDB-23149:
Cryo-electron microscopy reconstruction of antibody DH898.1 Fab-dimer bound near the CD4 binding site of HIV Env SOSIP trimer CH848 10.17
Method: single particle / : Edwards RJ, Acharya P

EMDB-23124:
Cryo-electron microcospy reconstruction of CH848.3.D0949.10.17chim.6R.DS.SOSIP.664 HIV Env
Method: single particle / : Edwards RJ, Acharya P

EMDB-23145:
Cryo-electron microscopy reconstruction of locally refined antibody DH898.1 Fab-dimer
Method: single particle / : Edwards RJ, Acharya P

PDB-7l6m:
Cryo-EM structure of DH898.1 Fab-dimer from local refinement of the Fab-dimer bound near the CD4 binding site of HIV-1 Env CH848 SOSIP trimer
Method: single particle / : Manne K, Edwards RJ, Acharya P

EMDB-23094:
Cryo-EM structure of SARS-CoV-2 2P S ectodomain bound to one copy of domain-swapped antibody 2G12
Method: single particle / : Manne K, Henderson R, Acharya P

EMDB-23095:
Cryo-EM structure of SARS-CoV-2 2P S ectodomain bound to two copies of domain-swapped antibody 2G12
Method: single particle / : Manne K, Henderson R, Acharya P

EMDB-23097:
Cryo-EM structure of SARS-CoV-2 2P S ectodomain bound domain-swapped antibody 2G12 from masked 3D refinement
Method: single particle / : Manne K, Henderson R, Acharya P

PDB-7l02:
Cryo-EM structure of SARS-CoV-2 2P S ectodomain bound to one copy of domain-swapped antibody 2G12
Method: single particle / : Manne K, Henderson R, Acharya P

PDB-7l06:
Cryo-EM structure of SARS-CoV-2 2P S ectodomain bound to two copies of domain-swapped antibody 2G12
Method: single particle / : Manne K, Henderson R, Acharya P

PDB-7l09:
Cryo-EM structure of SARS-CoV-2 2P S ectodomain bound domain-swapped antibody 2G12 from masked 3D refinement
Method: single particle / : Manne K, Henderson R, Acharya P

EMDB-22829:
Human Tom70 in complex with SARS CoV2 Orf9b
Method: single particle / : QCRG Structural Biology Consortium

EMDB-20963:
The structure of a red shifted photosystem I complex
Method: single particle / : Toporik H, Williams D, Chiu PL, Mazor Y

PDB-6uzv:
The structure of a red shifted photosystem I complex
Method: single particle / : Toporik H, Williams D, Chiu PL, Mazor Y

EMDB-20817:
Cryo-EM structure of HIV-1 neutralizing antibody DH270 UCA3 in complex with CH848 10.17DT Env
Method: single particle / : Acharya P, Henderson RC, Saunders KO, Haynes BF

EMDB-20818:
Cryo-EM structure of HIV-1 neutralizing antibody DH270.6 in complex with CH848 10.17DT Env
Method: single particle / : Acharya P, Henderson RC, Saunder KO, Haynes BF

EMDB-20819:
Cryo-EM structure of vaccine-elicited HIV-1 neutralizing antibody DH270.mu1 in complex with CH848 10.17DT Env
Method: single particle / : Acharya P, Henderson R, Saunders K, Haynes BF

PDB-6um5:
Cryo-EM structure of HIV-1 neutralizing antibody DH270 UCA3 in complex with CH848 10.17DT Env
Method: single particle / : Acharya P, Henderson RC, Saunders KO, Haynes BF

PDB-6um6:
Cryo-EM structure of HIV-1 neutralizing antibody DH270.6 in complex with CH848 10.17DT Env
Method: single particle / : Acharya P, Henderson RC, Saunder KO, Haynes BF

PDB-6um7:
Cryo-EM structure of vaccine-elicited HIV-1 neutralizing antibody DH270.mu1 in complex with CH848 10.17DT Env
Method: single particle / : Acharya P, Henderson RC, Saunders K, Haynes BF

EMDB-7321:
Integrative Structure and Functional Anatomy of a Nuclear Pore Complex
Method: subtomogram averaging / : Kim SJ, Fernandez-Martinez J, Nudelman I, Shi Y, Zhang W, Ludtke SJ, Akey CW, Chait BT, Sali A, Rout MP

EMDB-9401:
CH505 SOSIP.664 trimer in complex with DH522.2 Fab
Method: single particle / : Fera D, Harrison SC

EMDB-8507:
92BR SOSIP.664 trimer in complex with DH270.1 Fab
Method: single particle / : Fera D, Harrison SC

EMDB-8543:
3D negative stain EM structure of Pom152, the major component of the membrane ring of the nuclear pore complex
Method: single particle / : Upla P, Kim SJ, Sampathkumar P, Dutta K, Cahill SM, Chemmama IE, Williams R, Bonanno JB, Rice WJ, Stokes DL, Cowburn D, Almo SC, Sali A, Rout MP, Fernandez-Martinez J

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more